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Legacy Modernization

Replacing Windows File Servers: FSx for Windows vs FSx for NetApp ONTAP vs SharePoint vs S3

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October 25, 2026

6 min read

The file server is often the last thing in the server room. Four places its contents can go, depending on whether they are team documents, application shares, or archives: FSx for Windows File Server, FSx for NetApp ONTAP, SharePoint and OneDrive, or S3. How to split the share, and what each costs to run.

File Server
Amazon FSx
FSx for NetApp ONTAP
SharePoint
Windows Server

A typical company file server holds three different things in one tree: documents people collaborate on, shares that applications read and write by UNC path, and years of files nobody has opened since they were saved. Moving all of it to one destination is the usual mistake.

Where each kind of data goes

Data

Destination

Why

Team documents people edit together

SharePoint and OneDrive (if on Microsoft 365)

Co-authoring, sharing, search and retention policies already paid for

Application shares accessed by path, Windows ACLs, DFS namespaces

FSx for Windows File Server

Native SMB and Active Directory; applications see a normal Windows share

Mixed SMB and NFS, or an existing NetApp estate

FSx for NetApp ONTAP

Multiprotocol access, snapshots, and SnapMirror replication from on-premises NetApp

Archives and large unstructured data

S3, with lifecycle rules to colder classes

The cheapest per GB by far; access through applications or a file gateway

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What FSx for Windows costs

Pricing has three parts: storage (SSD or HDD, Single-AZ or Multi-AZ), throughput capacity, and backups. AWS's own example: 5 TB of HDD storage at $0.025 per GB-month is about $128, 16 MBps of throughput at $4.50 per MBps-month is $72, and backups of the full 5 TB at $0.050 per GB-month are $256 a month. Data deduplication, which FSx for Windows supports, often reduces general-purpose shares substantially and with it the storage line.

How we migrate a file server

  1. Report on the share: size by top-level folder, last-modified dates and owners. Most servers have a large fraction untouched in years.

  2. Split by the table above, and agree with owners what moves where.

  3. Archive first: move cold data to S3, keeping a manifest so anything can be found again.

  4. Copy active shares with AWS DataSync, which preserves Windows permissions and timestamps, then run a final incremental sync during the cutover window.

  5. Update DFS namespace targets or drive mappings so users and applications follow without changing paths.

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As of October 25, 2026. Provided as is, for general information, and accurate to the best of our knowledge on the date shown. Not legal, compliance, tax, financial or other professional advice. Prices, limits and vendor services change; check current vendor documentation before relying on anything here. Terms of use.